Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ICHPKGNE_90 | 6355 | 5651 | WalR | 4.17e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ICHPKGNE_42 | 13788 | 13985 | CspR | 1.22e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ICHPKGNE_135 | 851 | 1912 | repUS74 | 1062 / 1062 | 97.74 | CP000424 |
| ICHPKGNE_27 | 3118 | 3714 | rep38 | 598 / 903 | 89.97 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ICHPKGNE_1 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_3 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_4 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_5 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_6 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_7 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_8 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_9 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_10 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_11 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_12 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_13 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_14 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_15 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_17 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_18 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_19 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_20 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_21 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_22 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_24 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_25 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_26 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_27 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_28 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_29 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_30 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_31 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_34 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_35 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_36 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_37 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_38 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_39 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_40 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_42 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_43 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_44 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_45 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_46 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_47 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_48 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_49 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_50 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_51 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_52 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_53 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_54 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_55 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_56 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_57 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_58 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_59 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_60 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_61 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_62 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_63 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_64 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_65 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_66 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_67 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_68 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_69 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_70 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_71 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_72 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_73 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_74 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_75 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_76 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_77 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_78 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_79 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_80 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_81 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_82 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_83 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_84 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_85 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_86 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_87 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_88 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_89 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_90 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_91 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_92 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_93 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_94 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_95 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_97 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_98 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_99 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_100 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_101 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_102 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_104 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_105 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_106 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_108 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_109 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_110 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_112 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_113 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_114 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_115 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_116 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_117 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_118 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_119 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_120 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_121 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_122 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_123 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_126 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_128 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_129 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_130 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_132 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_133 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_134 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_135 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_137 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_138 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_139 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_140 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_141 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_142 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_144 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_145 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_148 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_149 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_150 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_151 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_154 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_155 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_156 | 0.0 | 1.0 | 0.0 |
| ICHPKGNE_157 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_158 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_160 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_161 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_162 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_163 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_165 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_166 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_167 | 1.0 | 0.0 | 1.0 |
| ICHPKGNE_168 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ICHPKGNE_39 | 43797 | 53297 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG1886, VOG4556, VOG4568 |
| ICHPKGNE_66 | 650 | 34120 | False | Siphoviridae | VOG0703, VOG1637, VOG7896, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG0637, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG7727, VOG0198, VOG0044, VOG3643, VOG0152, VOG0152, VOG0195, VOG9741, VOG0536, VOG9860, VOG11003, VOG10904, VOG0226, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)