Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BNEFENCH_59 | 44147 | 43443 | WalR | 1.65e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| BNEFENCH_38 | 14899 | 15096 | CspR | 6.96e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BNEFENCH_1 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_2 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_3 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_4 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_5 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_6 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_7 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_8 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_9 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_10 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_11 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_12 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_13 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_14 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_15 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_17 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_18 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_19 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_20 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_21 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_22 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_23 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_24 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_25 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_26 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_27 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_28 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_29 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_30 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_31 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_32 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_33 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_34 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_35 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_36 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_37 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_38 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_39 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_40 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_41 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_42 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_43 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_44 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_45 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_46 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_47 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_48 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_49 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_50 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_51 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_52 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_53 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_54 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_55 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_56 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_57 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_58 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_59 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_60 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_61 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_62 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_63 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_64 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_65 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_66 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_67 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_68 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_69 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_70 | 0.0 | 1.0 | 0.0 |
| BNEFENCH_71 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_72 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_73 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_76 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_77 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_78 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_79 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_80 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_82 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_83 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_85 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_86 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_87 | 1.0 | 0.0 | 1.0 |
| BNEFENCH_88 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BNEFENCH_36 | 185828 | 214812 | False | Siphoviridae | VOG0862, VOG5353, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG4693, VOG0744, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637, VOG0054, VOG0703 |
| BNEFENCH_38 | 35034 | 44211 | False | Siphoviridae | VOG1638, VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741, VOG4237, VOG2820, VOG0673 |
| BNEFENCH_39 | 1 | 23243 | False | Siphoviridae | VOG5088, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG7888, VOG0054, VOG4649 |
| BNEFENCH_70 | 2641 | 10464 | False | Siphoviridae | VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)