Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKFKGNLC_96 | 6268 | 5564 | WalR | 4.22e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EKFKGNLC_3 | 380 | 183 | CspR | 1.33e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EKFKGNLC_17 | 222 | 1283 | repUS74 | 1063 / 1062 | 93.41 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKFKGNLC_1 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_3 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_4 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_5 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_6 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_7 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_8 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_9 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_10 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_12 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_13 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_14 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_15 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_16 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_17 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_18 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_19 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_21 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_22 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_23 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_24 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_25 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_26 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_27 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_28 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_30 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_31 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_32 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_33 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_34 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_35 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_36 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_37 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_38 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_39 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_40 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_41 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_42 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_43 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_44 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_45 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_46 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_47 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_48 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_49 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_51 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_52 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_53 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_54 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_55 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_56 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_57 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_58 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_59 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_60 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_61 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_62 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_63 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_64 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_65 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_66 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_67 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_69 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_70 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_71 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_72 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_73 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_74 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_75 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_76 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_77 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_78 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_79 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_80 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_81 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_82 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_83 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_84 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_85 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_86 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_87 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_88 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_89 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_91 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_92 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_93 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_94 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_95 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_96 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_97 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_98 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_99 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_100 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_101 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_102 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_103 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_104 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_105 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_106 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_108 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_109 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_110 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_112 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_113 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_114 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_115 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_116 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_117 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_118 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_120 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_121 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_122 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_123 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_124 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_126 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_129 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_131 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_133 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_135 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_136 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_141 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_143 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_144 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_145 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_147 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_148 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_150 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_151 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_152 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_153 | 0.0 | 1.0 | 0.0 |
| EKFKGNLC_155 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_156 | 1.0 | 0.0 | 1.0 |
| EKFKGNLC_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKFKGNLC_22 | 93796 | 123885 | False | Siphoviridae | VOG3304, VOG0862, VOG5353, VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG4900, VOG5998, VOG5562, VOG4693, VOG0744, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
| EKFKGNLC_26 | 29803 | 33220 | False | Siphoviridae | VOG4632, VOG4606, VOG0205 |
| EKFKGNLC_82 | 1686 | 33789 | False | Siphoviridae | VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG6579, VOG0198, VOG5821, VOG0044, VOG3643, VOG0673, VOG2820, VOG4237, VOG9741, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG4552, VOG11003, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)