Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LGNMPDJE_50 | 309933 | 310637 | WalR | 3.81e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LGNMPDJE_26 | 19202 | 19399 | CspR | 1.62e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LGNMPDJE_24 | 18537 | 19727 | repUS43 | 1191 / 1206 | 92.61 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGNMPDJE_1 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_2 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_3 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_4 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_5 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_6 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_7 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_8 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_9 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_10 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_11 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_12 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_13 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_14 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_15 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_16 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_17 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_18 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_19 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_20 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_21 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_22 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_23 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_24 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_25 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_26 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_27 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_28 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_29 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_30 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_31 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_32 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_33 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_34 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_35 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_36 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_37 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_38 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_39 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_40 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_41 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_42 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_43 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_44 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_45 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_46 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_47 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_48 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_49 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_50 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_51 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_52 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_53 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_54 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_55 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_56 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_57 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_58 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_59 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_60 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_61 | 0.0 | 1.0 | 0.0 |
| LGNMPDJE_63 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_64 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_65 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_66 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_68 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_69 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_70 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_71 | 1.0 | 0.0 | 1.0 |
| LGNMPDJE_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGNMPDJE_23 | 417663 | 424211 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)