Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFMKPOCG_27 | 147514 | 146810 | WalR | 1.18e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EFMKPOCG_25 | 7137 | 7331 | CspR | 6.97e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EFMKPOCG_25 | 7137 | 7334 | CspA | 1.07e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFMKPOCG_63 | 266 | 1221 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFMKPOCG_1 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_2 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_3 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_4 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_5 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_6 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_7 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_8 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_9 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_10 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_11 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_12 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_13 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_14 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_15 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_16 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_17 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_18 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_19 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_20 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_21 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_22 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_23 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_24 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_25 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_26 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_27 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_28 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_29 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_30 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_31 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_32 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_33 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_34 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_35 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_36 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_37 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_38 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_39 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_40 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_41 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_42 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_43 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_44 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_45 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_46 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_47 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_48 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_49 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_50 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_51 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_52 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_53 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_54 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_55 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_56 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_57 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_58 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_59 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_60 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_61 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_62 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_63 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_64 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_65 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_66 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_67 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_68 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_69 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_70 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_71 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_72 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_73 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_74 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_75 | 0.0 | 1.0 | 0.0 |
| EFMKPOCG_76 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_77 | 1.0 | 0.0 | 1.0 |
| EFMKPOCG_78 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFMKPOCG_10 | 191906 | 214707 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| EFMKPOCG_10 | 221391 | 228987 | False | Siphoviridae | VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG0181, VOG8222, VOG1563, VOG1638, VOG0787, VOG8520 |
| EFMKPOCG_20 | 117639 | 149524 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0531, VOG4571, VOG0198, VOG4010, VOG3643, VOG0044, VOG6005, VOG0189, VOG4566, VOG0514, VOG0226 |
| EFMKPOCG_27 | 148116 | 159341 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| EFMKPOCG_37 | 2757 | 33294 | False | Siphoviridae | VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG1183, VOG0143, VOG0198, VOG7449, VOG3643, VOG5258 |
Phigaro v2.4.0 (Database: Jan. 2024 release)