Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FAIJCMAE_1 | 1759924 | 1760661 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| FAIJCMAE_1 | 934412 | 936331 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 99.84 | 100.00 | DQ525023.1 |
| FAIJCMAE_1 | 794291 | 796225 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.78 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FAIJCMAE_1 | 1759924 | 1760661 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| FAIJCMAE_1 | 934412 | 936331 | tet(O/W/32/O/W/O) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | DQ525023 |
| FAIJCMAE_1 | 794291 | 796203 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.95 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FAIJCMAE_1 | 1759927 | 1760661 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| FAIJCMAE_1 | 934412 | 936328 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | BLASTX | 99.84 | 100.00 | WP_063856419.1 |
| FAIJCMAE_1 | 794291 | 796204 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FAIJCMAE_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FAIJCMAE_1 | 675392 | 699106 | False | Myoviridae | VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5835, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
| FAIJCMAE_1 | 1075937 | 1117422 | False | Siphoviridae | VOG6495, VOG9667, VOG4552, VOG0685, VOG0283, VOG4566, VOG6495, VOG3307, VOG10646, VOG8177, VOG4693, VOG0198, VOG1345, VOG9702, VOG1422, VOG6570, VOG4618, VOG0612, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG8263, VOG0801, VOG4619, VOG5859, VOG5008, VOG0861, VOG5087, VOG0686, VOG0703, VOG8294, VOG4548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)