Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPPLPHIJ_4 | 16195 | 17058 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPPLPHIJ_4 | 16195 | 17058 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPPLPHIJ_4 | 16195 | 17055 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPPLPHIJ_1 | 498176 | 497472 | WalR | 1.78e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NPPLPHIJ_8 | 3656 | 4591 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NPPLPHIJ_5 | 8322 | 9382 | repUS73 | 1061 / 1101 | 97.17 | CP002654 |
| NPPLPHIJ_4 | 2707 | 3746 | rep38 | 1051 / 1104 | 80.40 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPPLPHIJ_1 | 0.0 | 1.0 | 0.0 |
| NPPLPHIJ_2 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_3 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_4 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_5 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_6 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_7 | 1.0 | 0.0 | 1.0 |
| NPPLPHIJ_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPPLPHIJ_1 | 3591 | 12688 | False | Siphoviridae | VOG0541, VOG7168, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| NPPLPHIJ_1 | 15536 | 24712 | False | Siphoviridae | VOG0044, VOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG10904, VOG4548, VOG0321 |
| NPPLPHIJ_1 | 1531921 | 1548738 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204, VOG0198, VOG0275 |
| NPPLPHIJ_1 | 1552298 | 1581148 | False | Siphoviridae | VOG4566, VOG4693, VOG0044, VOG3643, VOG0198, VOG0143, VOG0638, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG8294 |
| NPPLPHIJ_1 | 1879640 | 1909241 | False | Siphoviridae | VOG6545, VOG0514, VOG4799, VOG0189, VOG0044, VOG3643, VOG0634, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294 |
| NPPLPHIJ_1 | 2671980 | 2698338 | False | Siphoviridae | VOG8294, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG4841, VOG0198, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)