Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BGJLCCEC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BGJLCCEC_1 | 463415 | 504538 | True | Siphoviridae | VOG0221, VOG0221, VOG0221, VOG2576, VOG9502, VOG0641, VOG4589, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG7439, VOG4571, VOG4581, VOG8909, VOG0198, VOG4548, VOG0327, VOG4606, VOG4552, VOG0026, VOG0021, VOG1047, VOG7438, VOG11003, VOG4548, VOG3801, VOG6495, VOG0221 |
| BGJLCCEC_1 | 1495132 | 1531638 | False | Siphoviridae | VOG4824, VOG0703, VOG1637, VOG10223, VOG4856, VOG9997, VOG10972, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG10227, VOG0796, VOG0198, VOG4657, VOG9671, VOG4693, VOG8685, VOG0189, VOG4799, VOG6545, VOG0322, VOG0535, VOG4552, VOG9667, VOG0248, VOG7424 |
| BGJLCCEC_1 | 1600748 | 1636015 | False | Siphoviridae | VOG6371, VOG0054, VOG1637, VOG8438, VOG10972, VOG3462, VOG0801, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG1315, VOG3477, VOG0198, VOG3307, VOG8685, VOG0327, VOG4606, VOG6545, VOG4548, VOG0322, VOG0321, VOG2228, VOG9667, VOG9667, VOG0862 |
| BGJLCCEC_1 | 2127746 | 2140722 | False | Siphoviridae | VOG10457, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)