Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 4 | 4.58 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FNCNFNDC_21 | 187 | 552 | BRP(MBL) | ARO:3001205 | BRP(MBL) | 100.00 | 100.00 | KC503911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FNCNFNDC_21 | 556 | 1278 | blaNDM-5 | Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Temocillin | 100.00 | 88.93 | JN104597 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FNCNFNDC_21 | 190 | 552 | ble | bleomycin binding protein Ble-MBL | EXACTX | 100.00 | 100.00 | WP_004201167.1 |
| FNCNFNDC_21 | 559 | 1278 | blaNDM | NDM family subclass B1 metallo-beta-lactamase | PARTIALX | 100.00 | 88.89 | WP_023408309.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FNCNFNDC_41 | 252 | 466 | virulence_ecoli | traT | Outer membrane protein complement resistance | 100.0 | 70.96 | UEKA01000045 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FNCNFNDC_21 | 1278 | 559 | NDM-1 | 2.37e-159 | carbapenemase | 99.17 | 88.89 | AJD76950 |
| FNCNFNDC_1 | 447959 | 447255 | WalR | 3.10e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FNCNFNDC_34 | 260748 | 260942 | CspR | 1.54e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FNCNFNDC_34 | 260748 | 260945 | CspA | 2.37e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
| FNCNFNDC_47 | 401 | 300 | int | 6.91e-15 | integrase | 89.19 | 97.30 | CAB40914 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FNCNFNDC_18 | 1994 | 2367 | IncX3 | 374 / 374 | 100.00 | JN247852 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FNCNFNDC_1 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_2 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_3 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_4 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_5 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_6 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_7 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_8 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_9 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_10 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_11 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_12 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_13 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_14 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_16 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_17 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_18 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_19 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_20 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_21 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_23 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_24 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_25 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_26 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_27 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_28 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_29 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_30 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_31 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_32 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_33 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_34 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_35 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_36 | 1.0 | 0.0 | 1.0 |
| FNCNFNDC_45 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_56 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_67 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_71 | 0.0 | 1.0 | 0.0 |
| FNCNFNDC_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FNCNFNDC_56 | 73745 | 100969 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)