Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLLBBJJP_1 | 2488751 | 2489605 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| FLLBBJJP_1 | 2471665 | 2472867 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| FLLBBJJP_1 | 2274044 | 2275213 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| FLLBBJJP_1 | 1302896 | 1303213 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| FLLBBJJP_1 | 1302558 | 1302896 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| FLLBBJJP_1 | 845399 | 847969 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| FLLBBJJP_1 | 539905 | 541548 | vmlR | ARO:3004476 | vmlR | 98.90 | 100.00 | NC_000964.3 |
| FLLBBJJP_1 | 292395 | 292988 | tmrB | ARO:3003059 | tmrB | 98.98 | 100.00 | AL009126.3 |
| FLLBBJJP_1 | 241897 | 243330 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| FLLBBJJP_1 | 229083 | 230003 | mphK | ARO:3004541 | mphK | 99.35 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FLLBBJJP_1 | 229083 | 230003 | mph(K) | Spiramycin, Telithromycin | 99.46 | 100.00 | NC_000964 |
| FLLBBJJP_1 | 2488753 | 2489605 | aadK | Streptomycin | 98.94 | 99.77 | M26879 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLLBBJJP_1 | 229083 | 230000 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.35 | 100.00 | WP_003246254.1 |
| FLLBBJJP_1 | 539908 | 541548 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.90 | 100.00 | WP_003234144.1 |
| FLLBBJJP_1 | 2488754 | 2489605 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| FLLBBJJP_1 | 3929531 | 3930049 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
| FLLBBJJP_1 | 1974024 | 1976621 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.71 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FLLBBJJP_1 | 3442763 | 3443944 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| FLLBBJJP_1 | 2073301 | 2073942 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| FLLBBJJP_1 | 3027543 | 3028328 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| FLLBBJJP_1 | 3023707 | 3024645 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391077 |
| FLLBBJJP_1 | 3026321 | 3027517 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| FLLBBJJP_1 | 1928237 | 1930000 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| FLLBBJJP_1 | 3441138 | 3442280 | capA | 0.0 | Capsule | Immune modulation | 98.78 | 100.00 | NP_391469 |
| FLLBBJJP_1 | 3442299 | 3442748 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| FLLBBJJP_1 | 3016551 | 3023687 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.63 | 100.00 | NP_391076 |
| FLLBBJJP_1 | 3024673 | 3026292 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.53 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FLLBBJJP_1 | 102573 | 103709 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| FLLBBJJP_1 | 4324 | 5193 | pdxS | 2.95e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| FLLBBJJP_1 | 1614350 | 1615126 | CodY | 3.22e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FLLBBJJP_1 | 3284465 | 3285034 | ClpP | 2.39e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FLLBBJJP_1 | 0.0 | 1.0 | 0.0 |
| FLLBBJJP_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FLLBBJJP_1 | 1247431 | 1272719 | False | Myoviridae | VOG9667, VOG3490, VOG0189, VOG4843, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)