Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPNKDNJI_1 | 2610419 | 2611273 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| FPNKDNJI_1 | 2591666 | 2592868 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| FPNKDNJI_1 | 2360543 | 2361712 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| FPNKDNJI_1 | 1355839 | 1356156 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| FPNKDNJI_1 | 1355501 | 1355839 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| FPNKDNJI_1 | 889825 | 892395 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| FPNKDNJI_1 | 598444 | 600087 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| FPNKDNJI_1 | 275181 | 276614 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| FPNKDNJI_1 | 262368 | 263288 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FPNKDNJI_1 | 4098695 | 4100071 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 100.00 | 100.00 | X08034 |
| FPNKDNJI_1 | 262368 | 263288 | mph(K) | Spiramycin, Telithromycin | 99.35 | 100.00 | NC_000964 |
| FPNKDNJI_1 | 2610419 | 2611273 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPNKDNJI_1 | 4098698 | 4100071 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| FPNKDNJI_1 | 262368 | 263285 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| FPNKDNJI_1 | 2610422 | 2611273 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| FPNKDNJI_1 | 598447 | 600087 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| FPNKDNJI_1 | 4096178 | 4096696 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 89.60 | 100.00 | WP_003242546.1 |
| FPNKDNJI_1 | 2065044 | 2067641 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.65 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FPNKDNJI_1 | 2163236 | 2163877 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| FPNKDNJI_1 | 3174009 | 3174794 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| FPNKDNJI_1 | 3596858 | 3598039 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| FPNKDNJI_1 | 3172787 | 3173983 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| FPNKDNJI_1 | 2010835 | 2012598 | dep/capD | 0.0 | Capsule | Immune modulation | 99.32 | 100.00 | NP_389723 |
| FPNKDNJI_1 | 3595233 | 3596375 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| FPNKDNJI_1 | 3596394 | 3596843 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| FPNKDNJI_1 | 3163017 | 3170153 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.56 | 100.00 | NP_391076 |
| FPNKDNJI_1 | 3170173 | 3171111 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| FPNKDNJI_1 | 3171139 | 3172758 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FPNKDNJI_1 | 132400 | 133536 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| FPNKDNJI_1 | 18665 | 19534 | pdxS | 3.06e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| FPNKDNJI_1 | 1667274 | 1668050 | CodY | 3.35e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FPNKDNJI_1 | 3437607 | 3438176 | ClpP | 2.48e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPNKDNJI_1 | 0.0 | 1.0 | 0.0 |
| FPNKDNJI_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPNKDNJI_1 | 1299645 | 1325957 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
| FPNKDNJI_1 | 2539075 | 2567155 | False | Myoviridae | VOG7718, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749, VOG4685, VOG4688, VOG4773, VOG10227, VOG0796, VOG4662, VOG4673 |
| FPNKDNJI_2 | 18028 | 32345 | False | Unknown | VOG0052, VOG11080, VOG2352, VOG0397, VOG1198, VOG4561, VOG4714, VOG2352, VOG9332, VOG3851, VOG2725 |
| FPNKDNJI_2 | 61785 | 84365 | False | Siphoviridae | VOG6862, VOG0221, VOG4581, VOG5819, VOG1886, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG4545, VOG6163, VOG4605, VOG4599, VOG9244 |
Phigaro v2.4.0 (Database: Jan. 2024 release)