Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJKCAEII_1 | 302022 | 301318 | WalR | 5.90e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NJKCAEII_45 | 7222 | 7025 | CspR | 9.82e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJKCAEII_1 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_2 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_3 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_4 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_5 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_6 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_7 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_8 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_9 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_10 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_11 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_12 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_13 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_14 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_15 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_16 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_17 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_18 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_19 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_20 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_21 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_22 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_23 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_24 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_25 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_26 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_27 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_28 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_30 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_31 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_34 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_37 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_38 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_40 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_43 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_45 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_46 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_47 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_48 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_49 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_51 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_52 | 1.0 | 0.0 | 1.0 |
| NJKCAEII_53 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_55 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_66 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_75 | 0.0 | 1.0 | 0.0 |
| NJKCAEII_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJKCAEII_3 | 430 | 15929 | False | Siphoviridae | VOG1637, VOG0054, VOG0703, VOG4649, VOG0249, VOG0275, VOG9312, VOG0862, VOG9667, VOG3549, VOG0650, VOG0083, VOG0083, VOG1292, VOG4566, VOG6238, VOG1638, VOG11003, VOG4694 |
| NJKCAEII_7 | 2257 | 31477 | False | Siphoviridae | VOG4605, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG6238, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG0623, VOG0198, VOG2338, VOG3643, VOG0152, VOG4237, VOG0195, VOG9741, VOG4693, VOG6623, VOG7018, VOG4688, VOG0189, VOG4855, VOG0186 |
| NJKCAEII_14 | 2 | 33543 | False | Siphoviridae | VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG4570, VOG4694, VOG0198, VOG0044, VOG3643, VOG0152, VOG9759, VOG6238, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0514, VOG0283, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG6463, VOG7581, VOG6914 |
| NJKCAEII_45 | 75650 | 87030 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4609, VOG4632, VOG1581, VOG10397 |
Phigaro v2.4.0 (Database: Jan. 2024 release)