Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBKKCNHP_49 | 1906 | 2769 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBKKCNHP_49 | 1906 | 2769 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBKKCNHP_49 | 1909 | 2769 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBKKCNHP_3 | 7351 | 6647 | WalR | 6.53e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LBKKCNHP_67 | 146778 | 146584 | CspR | 6.77e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LBKKCNHP_67 | 146778 | 146581 | CspA | 1.04e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBKKCNHP_28 | 7201 | 8136 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LBKKCNHP_37 | 2694 | 3596 | rep38 | 903 / 903 | 99.45 | CP005943 |
| LBKKCNHP_32 | 563 | 1252 | repUS54 | 690 / 690 | 97.39 | EU185047 |
| LBKKCNHP_38 | 3173 | 4116 | repUS73 | 944 / 1101 | 97.03 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBKKCNHP_1 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_2 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_3 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_4 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_5 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_6 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_7 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_8 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_9 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_10 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_11 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_12 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_13 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_14 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_15 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_16 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_17 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_18 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_19 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_20 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_21 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_22 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_23 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_24 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_25 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_26 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_27 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_28 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_29 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_30 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_31 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_32 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_33 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_34 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_35 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_36 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_37 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_38 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_39 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_40 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_41 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_42 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_43 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_44 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_45 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_46 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_47 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_48 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_49 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_50 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_51 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_52 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_53 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_54 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_55 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_56 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_57 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_58 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_59 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_61 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_62 | 1.0 | 0.0 | 1.0 |
| LBKKCNHP_67 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_71 | 0.0 | 1.0 | 0.0 |
| LBKKCNHP_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBKKCNHP_12 | 9227 | 38077 | False | Siphoviridae | VOG4566, VOG4693, VOG0044, VOG3643, VOG0198, VOG0143, VOG0638, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG8294 |
| LBKKCNHP_45 | 25887 | 35063 | False | Siphoviridae | VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG1298 |
| LBKKCNHP_45 | 37911 | 57876 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG7168, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917 |
| LBKKCNHP_72 | 1348 | 11447 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)