Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GNDLDEIA_34 | 126387 | 127091 | WalR | 1.17e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GNDLDEIA_4 | 26424 | 26230 | CspR | 4.77e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GNDLDEIA_4 | 26424 | 26227 | CspA | 7.31e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GNDLDEIA_28 | 657 | 1592 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GNDLDEIA_1 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_2 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_3 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_4 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_5 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_6 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_7 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_8 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_9 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_10 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_11 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_12 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_13 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_14 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_15 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_16 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_17 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_18 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_19 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_20 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_21 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_22 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_23 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_24 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_25 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_26 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_27 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_28 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_29 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_30 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_31 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_32 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_33 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_34 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_35 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_36 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_37 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_38 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_39 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_40 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_42 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_43 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_44 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_45 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_46 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_47 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_48 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_49 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_50 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_51 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_52 | 1.0 | 0.0 | 1.0 |
| GNDLDEIA_56 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_67 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_74 | 0.0 | 1.0 | 0.0 |
| GNDLDEIA_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GNDLDEIA_13 | 1839 | 21382 | False | Siphoviridae | VOG1183, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG8917 |
| GNDLDEIA_14 | 2509 | 22263 | False | Siphoviridae | VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG1637, VOG4626, VOG4334, VOG7896, VOG9998 |
| GNDLDEIA_15 | 3833 | 27678 | False | Siphoviridae | VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| GNDLDEIA_34 | 114079 | 125144 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)