Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGDMOFCH_16 | 65808 | 65104 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JGDMOFCH_14 | 43174 | 43371 | CspR | 1.08e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGDMOFCH_1 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_2 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_3 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_4 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_5 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_6 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_7 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_8 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_9 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_10 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_11 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_12 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_13 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_14 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_15 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_16 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_17 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_18 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_19 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_20 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_21 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_22 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_23 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_24 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_25 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_26 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_28 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_29 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_30 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_31 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_32 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_33 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_34 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_35 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_36 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_39 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_40 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_41 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_43 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_44 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_45 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_46 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_47 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_50 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_51 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_52 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_53 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_54 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_55 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_56 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_58 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_59 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_60 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_61 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_62 | 1.0 | 0.0 | 1.0 |
| JGDMOFCH_63 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_66 | 0.0 | 1.0 | 0.0 |
| JGDMOFCH_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGDMOFCH_4 | 286791 | 309195 | False | Siphoviridae | VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202 |
| JGDMOFCH_13 | 16921 | 29555 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| JGDMOFCH_14 | 65747 | 99336 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9667, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG2820, VOG6131, VOG3643, VOG3643, VOG0198, VOG4570, VOG10904, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)