Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JMMEGDJH_3 | 66011 | 65307 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JMMEGDJH_1 | 152750 | 152553 | CspR | 1.08e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JMMEGDJH_1 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_2 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_3 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_4 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_5 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_6 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_7 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_8 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_9 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_10 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_11 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_12 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_13 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_14 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_15 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_16 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_17 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_18 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_19 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_20 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_21 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_22 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_23 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_24 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_25 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_26 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_27 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_28 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_29 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_31 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_32 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_33 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_34 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_35 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_36 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_37 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_38 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_39 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_40 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_42 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_43 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_44 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_45 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_46 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_47 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_48 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_49 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_50 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_51 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_52 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_53 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_54 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_57 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_58 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_59 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_61 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_62 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_63 | 1.0 | 0.0 | 1.0 |
| JMMEGDJH_66 | 0.0 | 1.0 | 0.0 |
| JMMEGDJH_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JMMEGDJH_1 | 96588 | 130177 | False | Siphoviridae | VOG1082, VOG4918, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG3643, VOG6131, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
| JMMEGDJH_12 | 286350 | 308754 | False | Siphoviridae | VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202 |
| JMMEGDJH_14 | 16921 | 29555 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)