Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHLPIACD_1 | 3069802 | 3069098 | WalR | 1.79e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DHLPIACD_5 | 27044 | 28144 | repUS73 | 1101 / 1101 | 95.10 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHLPIACD_1 | 0.0 | 1.0 | 0.0 |
| DHLPIACD_2 | 1.0 | 0.0 | 1.0 |
| DHLPIACD_3 | 1.0 | 0.0 | 1.0 |
| DHLPIACD_4 | 1.0 | 0.0 | 1.0 |
| DHLPIACD_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHLPIACD_1 | 960482 | 994355 | False | Siphoviridae | VOG2786, VOG0181, VOG2703, VOG1309, VOG0186, VOG4566, VOG0327, VOG1297, VOG10015, VOG0044, VOG1049, VOG0198, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG6965, VOG0701, VOG0801, VOG4619, VOG8438, VOG4334, VOG4705 |
| DHLPIACD_1 | 1308210 | 1332392 | False | Siphoviridae | VOG0044, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| DHLPIACD_1 | 1912840 | 1942782 | False | Siphoviridae | VOG1191, VOG0054, VOG0753, VOG8294, VOG10065, VOG8870, VOG10957, VOG4599, VOG4605, VOG0083, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198 |
| DHLPIACD_1 | 1944500 | 1948894 | False | Siphoviridae | VOG0189, VOG4566, VOG0514, VOG6545, VOG0322 |
Phigaro v2.4.0 (Database: Jan. 2024 release)