Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCNPNFBF_25 | 74119 | 77679 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.66 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCNPNFBF_11 | 74557 | 75051 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCNPNFBF_11 | 74557 | 75048 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCNPNFBF_1 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_2 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_3 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_4 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_5 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_6 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_7 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_8 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_9 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_10 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_11 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_12 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_13 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_14 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_15 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_16 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_17 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_18 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_19 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_20 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_21 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_22 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_23 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_24 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_25 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_26 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_27 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_28 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_29 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_30 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_31 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_32 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_33 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_34 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_35 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_36 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_37 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_38 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_39 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_40 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_41 | 1.0 | 0.0 | 1.0 |
| NCNPNFBF_42 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_43 | 0.0 | 1.0 | 0.0 |
| NCNPNFBF_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCNPNFBF_5 | 68957 | 98058 | False | Siphoviridae | VOG4603, VOG0226, VOG4693, VOG8271, VOG1931, VOG4552, VOG2038, VOG4841, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4555, VOG4553, VOG1581, VOG10082, VOG5504, VOG5793, VOG9722, VOG3416 |
| NCNPNFBF_33 | 18664 | 23686 | False | Unknown | VOG4694, VOG6655, VOG2986, VOG0136 |
Phigaro v2.4.0 (Database: Jan. 2024 release)