Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCDIAGJ_1 | 110842 | 112816 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| JOCDIAGJ_38 | 34924 | 35724 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JOCDIAGJ_1 | 110842 | 112767 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| JOCDIAGJ_38 | 34924 | 35724 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| JOCDIAGJ_8 | 52571 | 53521 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| JOCDIAGJ_8 | 52571 | 53521 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JOCDIAGJ_8 | 52571 | 53521 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JOCDIAGJ_8 | 52571 | 53521 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCDIAGJ_1 | 110845 | 112767 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| JOCDIAGJ_38 | 34924 | 35721 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JOCDIAGJ_8 | 52569 | 53522 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JOCDIAGJ_7 | 62991 | 61411 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
| JOCDIAGJ_76 | 474 | 929 | tnpA | 3.72e-107 | regulatory RNA/ transposase for IS200 | 95.39 | 100.00 | AKH06467 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOCDIAGJ_1 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_2 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_3 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_4 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_5 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_6 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_7 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_8 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_9 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_10 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_11 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_12 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_13 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_14 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_15 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_16 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_17 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_18 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_19 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_20 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_21 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_22 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_23 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_24 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_25 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_26 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_27 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_28 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_29 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_30 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_31 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_32 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_33 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_34 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_35 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_36 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_37 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_38 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_39 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_40 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_41 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_42 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_43 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_44 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_45 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_46 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_47 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_48 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_49 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_50 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_51 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_53 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_54 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_55 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_56 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_58 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_60 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_61 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_62 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_63 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_64 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_65 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_67 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_68 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_69 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_70 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_71 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_73 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_74 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_75 | 1.0 | 0.0 | 1.0 |
| JOCDIAGJ_76 | 0.0 | 1.0 | 0.0 |
| JOCDIAGJ_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)