Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 2 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNFPEIOG_82 | 1279 | 1923 | QnrB19 | ARO:3002734 | QnrB19 | 100.00 | 105.61 | JX298080.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JNFPEIOG_82 | 1279 | 1923 | qnrB19 | Ciprofloxacin | 100.00 | 100.00 | EU432277 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNFPEIOG_82 | 1279 | 1920 | qnrB19 | quinolone resistance pentapeptide repeat protein QnrB19 | ALLELEX | 100.00 | 100.00 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JNFPEIOG_102 | 1 | 1295 | ECSMS35_RS25765 | 0.0 | Colicin E1 | Exotoxin | 88.19 | 82.50 | WP_000447001 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNFPEIOG_102 | 472 | 1295 | virulence_ecoli | cea | Colicin E1 | 99.88 | 86.92 | LT985284 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNFPEIOG_8 | 27024 | 26320 | WalR | 6.85e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JNFPEIOG_7 | 91418 | 91221 | CspR | 3.74e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JNFPEIOG_82 | 662 | 775 | Col440I | 114 / 114 | 91.23 | CP023920.1 |
| JNFPEIOG_61 | 564 | 1123 | rep38 | 561 / 903 | 90.02 | CP005943 |
| JNFPEIOG_79 | 2091 | 2292 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNFPEIOG_1 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_2 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_3 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_4 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_5 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_6 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_7 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_8 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_9 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_10 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_11 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_12 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_13 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_14 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_15 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_16 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_17 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_18 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_19 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_20 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_21 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_22 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_23 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_24 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_25 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_26 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_27 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_28 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_29 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_30 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_31 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_32 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_33 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_34 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_35 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_36 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_37 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_38 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_39 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_40 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_41 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_42 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_43 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_44 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_45 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_46 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_47 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_48 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_49 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_50 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_51 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_52 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_53 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_54 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_55 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_56 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_57 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_58 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_59 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_60 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_61 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_62 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_63 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_64 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_65 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_66 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_67 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_68 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_69 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_70 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_71 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_72 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_73 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_74 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_75 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_76 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_77 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_78 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_79 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_81 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_82 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_83 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_84 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_85 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_86 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_87 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_88 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_89 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_90 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_91 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_92 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_93 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_94 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_96 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_97 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_98 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_99 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_100 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_101 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_102 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_103 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_104 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_106 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_107 | 0.0 | 1.0 | 0.0 |
| JNFPEIOG_108 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_109 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_110 | 1.0 | 0.0 | 1.0 |
| JNFPEIOG_111 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNFPEIOG_2 | 57980 | 64115 | False | Unknown | VOG9667, VOG6495, VOG2338, VOG1309, VOG0186, VOG4855, VOG0189 |
| JNFPEIOG_2 | 69778 | 104777 | False | Siphoviridae | VOG4570, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG0694, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4649, VOG8155, VOG6083, VOG1246, VOG7373 |
Phigaro v2.4.0 (Database: Jan. 2024 release)