Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGJMJCAO_8 | 3962 | 5200 | tet(40) | ARO:3000567 | tet(40) | 98.03 | 101.48 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGJMJCAO_8 | 3980 | 5200 | tet(40) | Doxycycline, Tetracycline | 99.75 | 100.00 | FJ158002 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGJMJCAO_8 | 3980 | 5197 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.26 | 100.00 | WP_009247026.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGJMJCAO_1 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_2 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_3 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_4 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_5 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_6 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_7 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_8 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_9 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_10 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_11 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_12 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_13 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_14 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_15 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_16 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_17 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_18 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_19 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_20 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_21 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_22 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_23 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_24 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_25 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_26 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_27 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_28 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_29 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_30 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_31 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_32 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_33 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_34 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_35 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_36 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_37 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_38 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_39 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_40 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_41 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_42 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_43 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_44 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_45 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_46 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_47 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_48 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_49 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_50 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_51 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_52 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_53 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_54 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_55 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_56 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_57 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_58 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_60 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_61 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_62 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_63 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_64 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_65 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_66 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_67 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_68 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_69 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_70 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_71 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_72 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_73 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_74 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_75 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_76 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_77 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_78 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_79 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_80 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_81 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_82 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_83 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_85 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_86 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_87 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_88 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_89 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_90 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_91 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_92 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_93 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_94 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_95 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_96 | 1.0 | 0.0 | 1.0 |
| GGJMJCAO_97 | 0.0 | 1.0 | 0.0 |
| GGJMJCAO_98 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGJMJCAO_4 | 79855 | 86399 | False | Unknown | VOG0705, |
| GGJMJCAO_8 | 23120 | 27934 | False | Myoviridae | / |
| GGJMJCAO_15 | 13330 | 26205 | False | Unknown | VOG6459, |
| GGJMJCAO_15 | 35281 | 64926 | False | Myoviridae | VOG5617, |
| GGJMJCAO_22 | 7049 | 16186 | True | Unknown | VOG9115, |
Phigaro v2.4.0 (Database: Jan. 2024 release)