Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGFEAJCL_1 | 214426 | 215631 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| DGFEAJCL_1 | 90694 | 91899 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| DGFEAJCL_30 | 12504 | 13241 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| DGFEAJCL_70 | 3 | 1961 | tet(Q) | ARO:3000191 | tet(Q) | 96.63 | 99.39 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DGFEAJCL_30 | 12504 | 13241 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| DGFEAJCL_70 | 1 | 1913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.37 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGFEAJCL_30 | 7932 | 8705 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| DGFEAJCL_1 | 215656 | 216165 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| DGFEAJCL_1 | 91924 | 92433 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| DGFEAJCL_1 | 214426 | 215628 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| DGFEAJCL_1 | 90694 | 91896 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| DGFEAJCL_70 | 3 | 1913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.22 | 99.38 | WP_063856407.1 |
| DGFEAJCL_30 | 12504 | 13238 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DGFEAJCL_27 | 22652 | 21072 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DGFEAJCL_155 | 146 | 726 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGFEAJCL_1 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_2 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_3 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_4 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_5 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_6 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_7 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_8 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_9 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_10 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_11 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_12 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_13 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_14 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_15 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_16 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_17 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_18 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_19 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_20 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_21 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_22 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_23 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_24 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_25 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_26 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_27 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_28 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_29 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_30 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_31 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_32 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_33 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_34 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_35 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_36 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_37 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_38 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_39 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_40 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_41 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_42 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_43 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_44 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_45 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_46 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_47 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_48 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_49 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_50 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_51 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_52 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_54 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_56 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_57 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_58 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_59 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_60 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_61 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_62 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_63 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_64 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_65 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_66 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_67 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_68 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_69 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_70 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_71 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_72 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_73 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_74 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_75 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_76 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_77 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_78 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_79 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_80 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_81 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_82 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_83 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_84 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_85 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_86 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_87 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_88 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_89 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_90 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_91 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_92 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_93 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_94 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_95 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_96 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_97 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_98 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_99 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_100 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_101 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_102 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_103 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_104 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_105 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_106 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_107 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_108 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_109 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_110 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_111 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_112 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_113 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_114 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_115 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_116 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_117 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_118 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_119 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_120 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_121 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_122 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_123 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_124 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_125 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_127 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_128 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_129 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_130 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_131 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_132 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_133 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_134 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_135 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_136 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_137 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_138 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_139 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_140 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_141 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_142 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_143 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_144 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_145 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_146 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_147 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_148 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_149 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_150 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_151 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_152 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_153 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_154 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_155 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_156 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_157 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_158 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_159 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_160 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_161 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_162 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_163 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_164 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_165 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_166 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_167 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_168 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_169 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_170 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_171 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_172 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_173 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_174 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_175 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_176 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_177 | 0.0 | 1.0 | 0.0 |
| DGFEAJCL_178 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_179 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_180 | 1.0 | 0.0 | 1.0 |
| DGFEAJCL_181 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)