Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJFNINO_1 | 2606997 | 2608916 | tet(M) | ARO:3000186 | tet(M) | 95.93 | 100.00 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NEJFNINO_1 | 2606997 | 2608916 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | X04388 |
| NEJFNINO_1 | 2619945 | 2621162 | mef(A) | Erythromycin, Azithromycin | 98.44 | 100.00 | HG423652 |
| NEJFNINO_1 | 2621283 | 2622746 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 92.55 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJFNINO_1 | 2606997 | 2608913 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.84 | 100.00 | WP_002414694.1 |
| NEJFNINO_1 | 2619945 | 2621159 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 100.00 | WP_058621816.1 |
| NEJFNINO_1 | 2621283 | 2622743 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 93.02 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEJFNINO_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEJFNINO_1 | 8542 | 15661 | False | Siphoviridae | VOG6109, |
| NEJFNINO_1 | 98024 | 104129 | True | Unknown | VOG0221, |
| NEJFNINO_1 | 785938 | 803026 | False | Siphoviridae | VOG4659, |
| NEJFNINO_1 | 2566208 | 2615996 | False | Siphoviridae | VOG6857, |
| NEJFNINO_1 | 5021405 | 5042873 | False | Siphoviridae | VOG4705, |
| NEJFNINO_1 | 6304495 | 6316718 | False | Siphoviridae | VOG7238, |
| NEJFNINO_1 | 6327559 | 6350716 | False | Siphoviridae | VOG4602, |
Phigaro v2.4.0 (Database: Jan. 2024 release)