Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LHLOLMII_136 | 59197 | 59901 | WalR | 5.97e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LHLOLMII_158 | 72649 | 72455 | CspR | 3.35e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LHLOLMII_158 | 72649 | 72452 | CspA | 5.14e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LHLOLMII_106 | 11856 | 12956 | repUS73 | 1101 / 1101 | 95.73 | CP002654 |
| LHLOLMII_151 | 2860 | 3816 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHLOLMII_1 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_2 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_4 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_5 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_6 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_7 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_8 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_9 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_10 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_11 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_12 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_13 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_14 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_15 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_16 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_17 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_18 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_19 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_20 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_21 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_22 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_23 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_24 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_25 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_26 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_27 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_28 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_29 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_30 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_32 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_33 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_34 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_35 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_36 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_37 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_38 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_39 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_40 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_41 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_42 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_43 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_44 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_45 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_46 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_47 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_48 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_49 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_55 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_65 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_66 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_67 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_68 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_69 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_70 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_71 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_72 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_73 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_74 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_75 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_76 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_77 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_78 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_79 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_80 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_81 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_82 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_83 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_84 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_85 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_86 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_87 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_88 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_89 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_90 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_91 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_92 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_93 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_94 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_95 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_96 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_97 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_98 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_99 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_100 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_101 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_102 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_103 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_104 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_105 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_106 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_107 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_108 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_109 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_110 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_111 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_112 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_113 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_114 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_115 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_116 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_117 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_118 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_119 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_120 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_121 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_122 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_123 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_124 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_125 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_126 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_127 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_128 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_129 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_130 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_131 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_132 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_133 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_134 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_135 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_136 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_137 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_138 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_139 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_140 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_141 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_142 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_143 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_144 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_145 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_146 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_147 | 0.0 | 1.0 | 0.0 |
| LHLOLMII_148 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_149 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_150 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_151 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_152 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_153 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_154 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_155 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_156 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_157 | 1.0 | 0.0 | 1.0 |
| LHLOLMII_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHLOLMII_70 | 95618 | 126962 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG7896, VOG3390, VOG4660, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG9846, VOG1183, VOG5709, VOG0198, VOG3643, VOG0044, VOG4693, VOG4855, VOG0535 |
| LHLOLMII_70 | 132214 | 146723 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG0205, VOG6414, VOG4609, VOG4632 |
| LHLOLMII_125 | 16054 | 51212 | False | Siphoviridae | VOG0054, VOG0753, VOG4918, VOG10016, VOG0254, VOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG7741, VOG3643, VOG0044, VOG4010, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG0226, VOG0283, VOG0535, VOG7859 |
Phigaro v2.4.0 (Database: Jan. 2024 release)