Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMLCJGHJ_8 | 59365 | 60069 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KMLCJGHJ_2 | 53119 | 53313 | CspR | 7.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KMLCJGHJ_2 | 53119 | 53316 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMLCJGHJ_53 | 879 | 1814 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KMLCJGHJ_57 | 2820 | 3722 | rep38 | 903 / 903 | 100.00 | CP005943 |
| KMLCJGHJ_80 | 139 | 1095 | repUS64 | 958 / 954 | 91.44 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMLCJGHJ_1 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_2 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_3 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_4 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_5 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_6 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_7 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_8 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_9 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_10 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_11 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_12 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_13 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_14 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_15 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_16 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_17 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_18 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_19 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_20 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_21 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_22 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_23 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_24 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_25 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_26 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_27 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_28 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_29 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_30 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_31 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_32 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_33 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_34 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_35 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_36 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_37 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_38 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_39 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_40 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_41 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_42 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_43 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_44 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_45 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_46 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_47 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_48 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_49 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_50 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_51 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_52 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_53 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_54 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_55 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_56 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_57 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_58 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_59 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_61 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_62 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_63 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_64 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_65 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_66 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_67 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_68 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_69 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_70 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_71 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_72 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_73 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_74 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_75 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_76 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_77 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_78 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_79 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_80 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_81 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_82 | 0.0 | 1.0 | 0.0 |
| KMLCJGHJ_84 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_85 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_86 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_87 | 1.0 | 0.0 | 1.0 |
| KMLCJGHJ_88 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMLCJGHJ_25 | 22512 | 46218 | False | Siphoviridae | VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| KMLCJGHJ_27 | 18641 | 36389 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508 |
| KMLCJGHJ_34 | 860 | 24798 | False | Siphoviridae | VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)