Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPMGHCOJ_6 | 59411 | 60115 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LPMGHCOJ_7 | 85994 | 85800 | CspR | 4.10e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LPMGHCOJ_7 | 85994 | 85797 | CspA | 6.29e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LPMGHCOJ_58 | 1237 | 2172 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LPMGHCOJ_75 | 1142 | 2044 | rep38 | 903 / 903 | 100.00 | CP005943 |
| LPMGHCOJ_96 | 1 | 694 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPMGHCOJ_1 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_2 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_3 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_4 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_5 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_6 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_7 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_8 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_9 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_10 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_11 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_12 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_13 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_14 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_15 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_16 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_17 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_18 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_19 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_20 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_21 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_22 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_23 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_24 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_25 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_26 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_27 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_28 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_29 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_30 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_31 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_32 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_33 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_34 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_35 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_36 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_37 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_38 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_39 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_40 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_41 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_42 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_43 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_44 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_45 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_46 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_47 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_48 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_49 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_50 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_51 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_52 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_53 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_54 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_55 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_56 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_57 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_58 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_59 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_60 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_61 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_63 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_64 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_65 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_66 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_67 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_68 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_69 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_70 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_71 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_72 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_73 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_74 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_75 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_76 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_77 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_78 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_79 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_80 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_81 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_82 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_83 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_84 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_85 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_86 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_87 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_88 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_89 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_90 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_91 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_93 | 0.0 | 1.0 | 0.0 |
| LPMGHCOJ_94 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_95 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_96 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_97 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_98 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_99 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_101 | 1.0 | 0.0 | 1.0 |
| LPMGHCOJ_102 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPMGHCOJ_25 | 24278 | 46427 | False | Siphoviridae | VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| LPMGHCOJ_28 | 19039 | 36787 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508 |
| LPMGHCOJ_37 | 860 | 24798 | False | Siphoviridae | VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)