Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFFBLOFH_7 | 59128 | 59832 | WalR | 5.70e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HFFBLOFH_10 | 6932 | 7126 | CspR | 4.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HFFBLOFH_10 | 6932 | 7129 | CspA | 6.31e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HFFBLOFH_58 | 1208 | 2143 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HFFBLOFH_75 | 1111 | 2013 | rep38 | 903 / 903 | 100.00 | CP005943 |
| HFFBLOFH_90 | 833 | 1789 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFFBLOFH_1 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_2 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_3 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_4 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_5 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_6 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_7 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_8 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_9 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_10 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_11 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_12 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_13 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_14 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_15 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_16 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_17 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_18 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_19 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_20 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_21 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_22 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_23 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_24 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_25 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_26 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_27 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_28 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_29 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_30 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_31 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_32 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_33 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_34 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_35 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_36 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_37 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_38 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_39 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_40 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_41 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_42 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_43 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_44 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_45 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_46 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_47 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_48 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_49 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_50 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_51 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_52 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_53 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_54 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_55 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_56 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_57 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_58 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_59 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_60 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_61 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_63 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_64 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_65 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_66 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_67 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_68 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_69 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_70 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_71 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_72 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_73 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_74 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_75 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_76 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_77 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_78 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_79 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_80 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_81 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_82 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_83 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_84 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_85 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_86 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_87 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_88 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_89 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_90 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_91 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_92 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_93 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_94 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_95 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_96 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_97 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_98 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_99 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_100 | 1.0 | 0.0 | 1.0 |
| HFFBLOFH_101 | 0.0 | 1.0 | 0.0 |
| HFFBLOFH_102 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFFBLOFH_8 | 3879 | 32674 | False | Siphoviridae | VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
| HFFBLOFH_16 | 19249 | 37519 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508 |
| HFFBLOFH_16 | 45548 | 69623 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
Phigaro v2.4.0 (Database: Jan. 2024 release)