Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPLCNJJA_8 | 59358 | 60062 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CPLCNJJA_6 | 6932 | 7126 | CspR | 5.21e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CPLCNJJA_6 | 6932 | 7129 | CspA | 7.99e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPLCNJJA_54 | 1190 | 2125 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CPLCNJJA_70 | 1080 | 1982 | rep38 | 903 / 903 | 100.00 | CP005943 |
| CPLCNJJA_93 | 281 | 1237 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPLCNJJA_1 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_2 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_3 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_4 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_5 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_6 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_7 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_8 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_9 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_10 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_11 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_12 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_13 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_14 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_15 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_16 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_17 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_18 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_19 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_20 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_21 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_22 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_23 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_24 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_25 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_26 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_27 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_28 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_29 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_30 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_31 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_32 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_33 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_34 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_35 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_36 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_37 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_38 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_39 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_40 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_41 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_42 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_43 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_44 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_45 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_46 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_47 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_48 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_49 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_50 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_51 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_52 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_53 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_54 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_55 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_56 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_58 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_59 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_60 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_61 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_62 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_63 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_64 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_65 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_66 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_67 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_68 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_69 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_70 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_71 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_72 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_73 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_74 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_75 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_76 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_77 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_78 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_79 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_80 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_81 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_82 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_83 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_84 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_85 | 0.0 | 1.0 | 0.0 |
| CPLCNJJA_86 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_87 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_88 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_89 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_90 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_91 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_92 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_93 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_94 | 1.0 | 0.0 | 1.0 |
| CPLCNJJA_95 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPLCNJJA_10 | 19543 | 38525 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508, VOG4602, VOG9667 |
| CPLCNJJA_10 | 45759 | 70007 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
| CPLCNJJA_27 | 5461 | 34155 | False | Siphoviridae | VOG4626, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)