Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCKBMHFB_8 | 59356 | 60060 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KCKBMHFB_6 | 6932 | 7126 | CspR | 5.21e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KCKBMHFB_6 | 6932 | 7129 | CspA | 7.99e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KCKBMHFB_54 | 1181 | 2116 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KCKBMHFB_71 | 1086 | 1988 | rep38 | 903 / 903 | 100.00 | CP005943 |
| KCKBMHFB_85 | 1467 | 2076 | repUS64 | 611 / 954 | 87.73 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCKBMHFB_1 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_2 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_3 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_4 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_5 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_6 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_7 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_8 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_9 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_10 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_11 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_12 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_13 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_14 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_15 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_16 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_17 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_18 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_19 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_20 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_21 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_22 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_23 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_24 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_25 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_26 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_27 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_28 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_29 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_30 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_31 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_32 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_33 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_34 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_35 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_36 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_37 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_38 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_39 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_40 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_41 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_42 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_43 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_44 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_45 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_46 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_47 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_48 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_49 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_50 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_51 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_52 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_53 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_54 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_55 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_56 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_57 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_58 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_60 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_61 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_62 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_63 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_64 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_65 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_66 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_67 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_68 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_69 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_70 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_71 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_72 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_73 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_74 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_75 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_76 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_77 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_78 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_79 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_80 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_81 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_82 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_83 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_84 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_85 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_86 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_87 | 0.0 | 1.0 | 0.0 |
| KCKBMHFB_88 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_89 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_90 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_91 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_92 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_93 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_95 | 1.0 | 0.0 | 1.0 |
| KCKBMHFB_96 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCKBMHFB_14 | 1868 | 27151 | False | Siphoviridae | VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG0198 |
| KCKBMHFB_14 | 33428 | 51991 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| KCKBMHFB_28 | 8217 | 36936 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)