Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDHMNOLC_8 | 44267 | 43563 | WalR | 5.70e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EDHMNOLC_6 | 111152 | 110958 | CspR | 5.21e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EDHMNOLC_6 | 111152 | 110955 | CspA | 7.99e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDHMNOLC_53 | 1174 | 2109 | rep28 | 936 / 936 | 100.00 | CP005948 |
| EDHMNOLC_54 | 3012 | 3914 | rep38 | 903 / 903 | 100.00 | CP005943 |
| EDHMNOLC_83 | 171 | 1127 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDHMNOLC_1 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_2 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_3 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_4 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_5 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_6 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_7 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_8 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_9 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_10 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_11 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_12 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_13 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_14 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_15 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_16 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_17 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_18 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_19 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_20 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_21 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_22 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_23 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_24 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_25 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_26 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_27 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_28 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_29 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_30 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_31 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_32 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_33 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_34 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_35 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_36 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_37 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_38 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_39 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_40 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_41 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_42 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_43 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_44 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_45 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_46 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_47 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_48 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_49 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_50 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_51 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_52 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_53 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_54 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_55 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_56 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_57 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_59 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_60 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_61 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_62 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_63 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_64 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_65 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_66 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_67 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_68 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_69 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_70 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_71 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_72 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_73 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_74 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_75 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_76 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_77 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_78 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_79 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_80 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_81 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_82 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_83 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_84 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_85 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_86 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_87 | 0.0 | 1.0 | 0.0 |
| EDHMNOLC_88 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_89 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_90 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_91 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_93 | 1.0 | 0.0 | 1.0 |
| EDHMNOLC_94 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDHMNOLC_10 | 22052 | 48462 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| EDHMNOLC_10 | 55690 | 74426 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| EDHMNOLC_28 | 7877 | 38055 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)