Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BGPDLOLI_7 | 59397 | 60101 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BGPDLOLI_9 | 6932 | 7126 | CspR | 4.10e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BGPDLOLI_9 | 6932 | 7129 | CspA | 6.29e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BGPDLOLI_58 | 1225 | 2160 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BGPDLOLI_75 | 1134 | 2036 | rep38 | 903 / 903 | 100.00 | CP005943 |
| BGPDLOLI_88 | 757 | 1713 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BGPDLOLI_1 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_2 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_3 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_4 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_5 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_6 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_7 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_8 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_9 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_10 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_11 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_12 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_13 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_14 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_15 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_16 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_17 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_18 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_19 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_20 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_21 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_22 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_23 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_24 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_25 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_26 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_27 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_28 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_29 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_30 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_31 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_32 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_33 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_34 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_35 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_36 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_37 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_38 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_39 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_40 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_41 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_42 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_43 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_44 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_45 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_46 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_47 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_48 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_49 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_50 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_51 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_52 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_53 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_54 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_55 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_56 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_57 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_58 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_59 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_60 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_61 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_63 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_64 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_65 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_66 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_67 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_68 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_69 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_70 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_71 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_72 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_73 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_74 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_75 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_76 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_77 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_78 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_79 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_80 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_81 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_82 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_83 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_84 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_85 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_86 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_87 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_88 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_89 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_90 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_91 | 0.0 | 1.0 | 0.0 |
| BGPDLOLI_92 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_93 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_95 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_96 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_97 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_98 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_99 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_100 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_101 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_102 | 1.0 | 0.0 | 1.0 |
| BGPDLOLI_103 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BGPDLOLI_27 | 4671 | 28114 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955, VOG4705 |
| BGPDLOLI_29 | 19312 | 37335 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508 |
| BGPDLOLI_37 | 1106 | 25312 | False | Siphoviridae | VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)