Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGKBAADB_8 | 59371 | 60075 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JGKBAADB_5 | 110978 | 110784 | CspR | 5.20e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JGKBAADB_5 | 110978 | 110781 | CspA | 7.98e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGKBAADB_54 | 1206 | 2141 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JGKBAADB_71 | 1102 | 2004 | rep38 | 903 / 903 | 100.00 | CP005943 |
| JGKBAADB_81 | 653 | 1334 | repUS64 | 683 / 954 | 89.02 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGKBAADB_1 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_2 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_3 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_4 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_5 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_6 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_7 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_8 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_9 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_10 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_11 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_12 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_13 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_14 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_15 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_16 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_17 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_18 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_19 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_20 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_21 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_22 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_23 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_24 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_25 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_26 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_27 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_28 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_29 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_30 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_31 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_32 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_33 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_34 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_35 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_36 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_37 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_38 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_39 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_40 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_41 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_42 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_43 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_44 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_45 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_46 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_47 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_48 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_49 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_50 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_51 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_52 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_53 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_54 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_55 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_56 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_58 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_59 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_60 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_61 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_62 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_63 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_64 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_65 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_66 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_67 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_68 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_69 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_70 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_71 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_72 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_73 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_74 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_75 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_76 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_77 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_78 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_79 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_80 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_81 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_82 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_83 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_84 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_85 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_86 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_87 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_88 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_89 | 0.0 | 1.0 | 0.0 |
| JGKBAADB_90 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_91 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_92 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_93 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_95 | 1.0 | 0.0 | 1.0 |
| JGKBAADB_96 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGKBAADB_9 | 66725 | 97164 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
| JGKBAADB_11 | 24253 | 48501 | False | Siphoviridae | VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| JGKBAADB_11 | 55740 | 74512 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)