Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIHIPHKE_8 | 44225 | 43521 | WalR | 5.70e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JIHIPHKE_3 | 53128 | 53322 | CspR | 7.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JIHIPHKE_3 | 53128 | 53325 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIHIPHKE_54 | 1132 | 2067 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JIHIPHKE_48 | 8015 | 8917 | rep38 | 903 / 903 | 100.00 | CP005943 |
| JIHIPHKE_86 | 833 | 1526 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIHIPHKE_1 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_2 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_3 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_4 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_5 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_6 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_7 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_8 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_9 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_10 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_11 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_12 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_13 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_14 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_15 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_16 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_17 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_18 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_19 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_20 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_21 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_22 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_23 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_24 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_25 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_26 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_27 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_28 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_29 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_30 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_31 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_32 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_33 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_34 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_35 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_36 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_37 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_38 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_39 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_40 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_41 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_42 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_43 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_44 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_45 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_46 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_47 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_48 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_49 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_50 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_51 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_52 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_53 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_54 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_55 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_56 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_57 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_59 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_60 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_61 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_62 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_63 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_64 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_65 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_66 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_67 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_68 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_69 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_70 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_71 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_72 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_73 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_74 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_75 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_76 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_77 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_78 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_79 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_80 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_81 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_82 | 0.0 | 1.0 | 0.0 |
| JIHIPHKE_83 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_84 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_85 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_86 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_87 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_88 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_89 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_91 | 1.0 | 0.0 | 1.0 |
| JIHIPHKE_92 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIHIPHKE_10 | 22052 | 46768 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| JIHIPHKE_10 | 56407 | 74529 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| JIHIPHKE_33 | 856 | 24794 | False | Siphoviridae | VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)