Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HLFCPJDF_4 | 59134 | 59838 | WalR | 9.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HLFCPJDF_5 | 53051 | 53245 | CspR | 7.23e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HLFCPJDF_5 | 53051 | 53248 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HLFCPJDF_48 | 1088 | 2023 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HLFCPJDF_44 | 6715 | 7617 | rep38 | 903 / 903 | 100.00 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLFCPJDF_1 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_2 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_3 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_4 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_5 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_6 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_7 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_8 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_9 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_10 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_11 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_12 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_13 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_14 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_15 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_16 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_17 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_18 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_19 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_20 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_21 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_22 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_23 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_24 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_25 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_26 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_27 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_28 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_29 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_30 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_31 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_32 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_33 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_34 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_35 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_36 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_37 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_38 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_39 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_40 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_41 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_42 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_43 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_44 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_45 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_46 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_47 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_48 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_49 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_50 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_51 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_53 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_54 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_55 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_56 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_57 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_58 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_59 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_60 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_61 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_62 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_63 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_64 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_65 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_66 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_67 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_68 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_69 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_70 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_71 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_72 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_73 | 0.0 | 1.0 | 0.0 |
| HLFCPJDF_74 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_75 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_76 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_77 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_78 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_79 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_80 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_82 | 1.0 | 0.0 | 1.0 |
| HLFCPJDF_83 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLFCPJDF_9 | 22442 | 49247 | False | Siphoviridae | VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| HLFCPJDF_9 | 55470 | 74307 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| HLFCPJDF_26 | 7877 | 38445 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG4626 |
Phigaro v2.4.0 (Database: Jan. 2024 release)