Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDJDJCIN_8 | 44101 | 43397 | WalR | 5.70e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DDJDJCIN_3 | 53154 | 53348 | CspR | 7.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DDJDJCIN_3 | 53154 | 53351 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DDJDJCIN_52 | 625 | 1560 | rep28 | 936 / 936 | 100.00 | CP005948 |
| DDJDJCIN_54 | 2985 | 3887 | rep38 | 903 / 903 | 100.00 | CP005943 |
| DDJDJCIN_86 | 1 | 694 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDJDJCIN_1 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_2 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_3 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_4 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_5 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_6 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_7 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_8 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_9 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_10 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_11 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_12 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_13 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_14 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_15 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_16 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_17 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_18 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_19 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_20 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_21 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_22 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_23 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_24 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_25 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_26 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_27 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_28 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_29 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_30 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_31 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_32 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_33 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_34 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_35 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_36 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_37 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_38 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_39 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_40 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_41 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_42 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_43 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_44 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_45 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_46 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_47 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_48 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_49 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_50 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_51 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_52 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_53 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_54 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_55 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_56 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_58 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_59 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_60 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_61 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_62 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_63 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_64 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_65 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_66 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_67 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_68 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_69 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_70 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_71 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_72 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_73 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_74 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_75 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_76 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_77 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_78 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_79 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_80 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_81 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_82 | 0.0 | 1.0 | 0.0 |
| DDJDJCIN_83 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_84 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_85 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_86 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_87 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_88 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_89 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_90 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_92 | 1.0 | 0.0 | 1.0 |
| DDJDJCIN_93 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDJDJCIN_10 | 22889 | 48615 | False | Siphoviridae | VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| DDJDJCIN_10 | 55815 | 74521 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| DDJDJCIN_26 | 5608 | 34276 | False | Siphoviridae | VOG4626, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322 |
Phigaro v2.4.0 (Database: Jan. 2024 release)