Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMCAHBCO_8 | 59128 | 59832 | WalR | 5.70e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HMCAHBCO_3 | 53142 | 53336 | CspR | 7.25e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HMCAHBCO_3 | 53142 | 53339 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HMCAHBCO_52 | 1134 | 2069 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HMCAHBCO_54 | 2981 | 3883 | rep38 | 903 / 903 | 100.00 | CP005943 |
| HMCAHBCO_82 | 1 | 694 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMCAHBCO_1 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_2 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_3 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_4 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_5 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_6 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_7 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_8 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_9 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_10 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_11 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_12 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_13 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_14 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_15 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_16 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_17 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_18 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_19 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_20 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_21 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_22 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_23 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_24 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_25 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_26 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_27 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_28 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_29 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_30 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_31 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_32 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_33 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_34 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_35 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_36 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_37 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_38 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_39 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_40 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_41 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_42 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_43 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_44 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_45 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_46 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_47 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_48 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_49 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_50 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_51 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_52 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_53 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_54 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_55 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_57 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_58 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_59 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_60 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_61 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_62 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_63 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_64 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_65 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_66 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_67 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_68 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_69 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_70 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_71 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_72 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_73 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_74 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_75 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_76 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_77 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_78 | 0.0 | 1.0 | 0.0 |
| HMCAHBCO_79 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_80 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_81 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_82 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_83 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_84 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_85 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_87 | 1.0 | 0.0 | 1.0 |
| HMCAHBCO_88 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMCAHBCO_16 | 24719 | 46868 | False | Siphoviridae | VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| HMCAHBCO_26 | 4353 | 32001 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG4605, VOG6163, VOG5904, VOG9745, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG11024 |
| HMCAHBCO_32 | 19012 | 29476 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)