Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALCLBJLE_3 | 113496 | 112792 | WalR | 9.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| ALCLBJLE_4 | 53109 | 53303 | CspR | 7.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| ALCLBJLE_4 | 53109 | 53306 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ALCLBJLE_51 | 1117 | 2052 | rep28 | 936 / 936 | 100.00 | CP005948 |
| ALCLBJLE_52 | 2977 | 3879 | rep38 | 903 / 903 | 100.00 | CP005943 |
| ALCLBJLE_86 | 835 | 1528 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALCLBJLE_1 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_2 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_3 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_4 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_5 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_6 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_7 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_8 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_9 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_10 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_11 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_12 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_13 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_14 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_15 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_16 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_17 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_18 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_19 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_20 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_21 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_22 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_23 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_24 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_25 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_26 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_27 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_28 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_29 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_30 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_31 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_32 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_33 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_34 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_35 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_36 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_37 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_38 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_39 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_40 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_41 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_42 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_43 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_44 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_45 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_46 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_47 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_48 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_49 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_50 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_51 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_52 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_53 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_54 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_55 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_57 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_58 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_59 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_60 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_61 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_62 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_63 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_64 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_65 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_66 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_67 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_68 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_69 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_70 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_71 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_72 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_73 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_74 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_75 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_76 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_77 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_78 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_79 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_80 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_81 | 0.0 | 1.0 | 0.0 |
| ALCLBJLE_82 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_83 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_84 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_85 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_86 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_87 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_88 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_89 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_90 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_92 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_93 | 1.0 | 0.0 | 1.0 |
| ALCLBJLE_94 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALCLBJLE_14 | 2031 | 26598 | False | Siphoviridae | VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| ALCLBJLE_14 | 32881 | 51917 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| ALCLBJLE_25 | 4517 | 35731 | False | Siphoviridae | VOG10944, VOG10957, VOG9244, VOG4599, VOG4605, VOG6163, VOG9745, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)