Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IGADMPMG_15 | 28478 | 29182 | WalR | 4.01e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IGADMPMG_11 | 7167 | 7361 | CspR | 3.73e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IGADMPMG_11 | 7167 | 7364 | CspA | 5.72e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IGADMPMG_62 | 1191 | 2126 | rep28 | 936 / 936 | 100.00 | CP005948 |
| IGADMPMG_80 | 1310 | 2212 | rep38 | 903 / 903 | 100.00 | CP005943 |
| IGADMPMG_104 | 813 | 1554 | repUS64 | 743 / 954 | 89.91 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGADMPMG_1 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_2 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_3 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_4 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_5 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_6 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_7 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_8 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_9 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_10 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_11 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_12 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_13 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_14 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_15 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_16 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_17 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_18 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_19 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_20 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_21 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_22 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_23 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_24 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_25 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_26 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_27 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_28 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_29 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_30 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_31 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_32 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_33 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_34 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_35 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_36 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_37 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_38 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_39 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_40 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_41 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_42 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_43 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_44 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_45 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_46 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_47 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_48 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_49 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_50 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_51 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_52 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_53 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_54 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_55 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_56 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_57 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_58 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_59 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_60 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_61 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_62 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_63 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_64 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_65 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_66 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_68 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_69 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_70 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_71 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_72 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_73 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_74 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_75 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_76 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_77 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_78 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_79 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_80 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_81 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_82 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_83 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_84 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_85 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_86 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_87 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_88 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_89 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_90 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_91 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_92 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_93 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_94 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_95 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_96 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_97 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_98 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_99 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_100 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_101 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_103 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_104 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_105 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_106 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_107 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_108 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_109 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_110 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_111 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_112 | 0.0 | 1.0 | 0.0 |
| IGADMPMG_113 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_114 | 1.0 | 0.0 | 1.0 |
| IGADMPMG_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IGADMPMG_5 | 3372 | 35428 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG6163, VOG9745, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685, VOG0685 |
| IGADMPMG_7 | 24928 | 50757 | False | Siphoviridae | VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG0198 |
| IGADMPMG_7 | 56462 | 75413 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)