Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPEPPOKF_8 | 44267 | 43563 | WalR | 5.73e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NPEPPOKF_52 | 1831 | 1637 | CspR | 3.85e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NPEPPOKF_52 | 1831 | 1634 | CspA | 5.91e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NPEPPOKF_54 | 1182 | 2117 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NPEPPOKF_72 | 1072 | 1974 | rep38 | 903 / 903 | 100.00 | CP005943 |
| NPEPPOKF_84 | 1197 | 1833 | repUS64 | 638 / 954 | 88.24 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPEPPOKF_1 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_2 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_3 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_4 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_5 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_6 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_7 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_8 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_9 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_10 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_11 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_12 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_13 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_14 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_15 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_16 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_17 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_18 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_19 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_20 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_21 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_22 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_23 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_24 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_25 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_26 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_27 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_28 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_29 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_30 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_31 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_32 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_33 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_34 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_35 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_36 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_37 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_38 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_39 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_40 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_41 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_42 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_43 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_44 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_45 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_46 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_47 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_48 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_49 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_50 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_51 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_52 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_53 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_54 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_55 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_56 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_57 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_58 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_59 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_60 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_62 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_63 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_64 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_65 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_66 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_67 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_68 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_69 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_70 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_71 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_72 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_73 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_74 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_75 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_76 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_77 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_78 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_79 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_80 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_81 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_82 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_83 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_84 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_85 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_86 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_87 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_88 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_89 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_90 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_91 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_92 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_93 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_94 | 1.0 | 0.0 | 1.0 |
| NPEPPOKF_96 | 0.0 | 1.0 | 0.0 |
| NPEPPOKF_97 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPEPPOKF_9 | 66697 | 97288 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
| NPEPPOKF_13 | 22277 | 48689 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| NPEPPOKF_13 | 55921 | 74669 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)