Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NMJEINLG_6 | 59376 | 60080 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NMJEINLG_8 | 7187 | 7381 | CspR | 4.13e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NMJEINLG_8 | 7187 | 7384 | CspA | 6.34e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NMJEINLG_60 | 1205 | 2140 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NMJEINLG_77 | 1103 | 2005 | rep38 | 903 / 903 | 100.00 | CP005943 |
| NMJEINLG_89 | 680 | 1316 | repUS64 | 638 / 954 | 88.24 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMJEINLG_1 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_2 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_3 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_4 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_5 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_6 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_7 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_8 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_9 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_10 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_11 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_12 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_13 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_14 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_15 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_16 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_17 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_18 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_19 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_20 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_21 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_22 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_23 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_24 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_25 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_26 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_27 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_28 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_29 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_30 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_31 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_32 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_33 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_34 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_35 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_36 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_37 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_38 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_39 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_40 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_41 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_42 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_43 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_44 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_45 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_46 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_47 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_48 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_49 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_50 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_51 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_52 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_53 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_54 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_55 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_56 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_57 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_58 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_59 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_60 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_61 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_62 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_63 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_65 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_66 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_67 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_68 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_69 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_70 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_71 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_72 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_73 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_74 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_75 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_76 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_77 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_78 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_79 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_80 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_81 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_82 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_83 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_84 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_85 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_86 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_87 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_88 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_90 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_91 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_92 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_93 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_94 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_95 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_96 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_97 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_99 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_100 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_101 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_103 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_104 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_105 | 1.0 | 0.0 | 1.0 |
| NMJEINLG_106 | 0.0 | 1.0 | 0.0 |
| NMJEINLG_107 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMJEINLG_26 | 19237 | 37044 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508 |
| NMJEINLG_35 | 3832 | 28282 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643 |
| NMJEINLG_37 | 4516 | 26492 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
Phigaro v2.4.0 (Database: Jan. 2024 release)