Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCMKPCHI_8 | 59360 | 60064 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KCMKPCHI_6 | 6926 | 7120 | CspR | 5.21e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KCMKPCHI_6 | 6926 | 7123 | CspA | 7.99e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KCMKPCHI_54 | 1198 | 2133 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KCMKPCHI_64 | 1316 | 2218 | rep38 | 903 / 903 | 100.00 | CP005943 |
| KCMKPCHI_82 | 829 | 1785 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCMKPCHI_1 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_2 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_3 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_4 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_5 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_6 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_7 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_8 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_9 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_10 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_11 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_12 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_13 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_14 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_15 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_16 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_17 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_18 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_19 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_20 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_21 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_22 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_23 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_24 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_25 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_26 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_27 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_28 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_29 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_30 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_31 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_32 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_33 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_34 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_35 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_36 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_37 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_38 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_39 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_40 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_41 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_42 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_43 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_44 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_45 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_46 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_47 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_48 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_49 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_50 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_51 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_52 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_53 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_54 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_55 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_57 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_58 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_59 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_60 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_61 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_62 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_63 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_64 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_65 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_66 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_67 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_68 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_69 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_70 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_71 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_72 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_73 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_74 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_75 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_76 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_77 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_78 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_79 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_80 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_81 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_82 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_83 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_84 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_86 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_87 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_88 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_89 | 0.0 | 1.0 | 0.0 |
| KCMKPCHI_90 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_91 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_92 | 1.0 | 0.0 | 1.0 |
| KCMKPCHI_93 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCMKPCHI_15 | 19138 | 38321 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508, VOG4602, VOG9667 |
| KCMKPCHI_15 | 44028 | 69684 | False | Siphoviridae | VOG0044, VOG0198, VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
| KCMKPCHI_28 | 3600 | 35058 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG11024, VOG0189, VOG0514, VOG6545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)