Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OGLODLJF_4 | 59352 | 60056 | WalR | 9.56e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OGLODLJF_6 | 53433 | 53627 | CspR | 5.77e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OGLODLJF_6 | 53433 | 53630 | CspA | 8.85e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OGLODLJF_54 | 1182 | 2117 | rep28 | 936 / 936 | 100.00 | CP005948 |
| OGLODLJF_70 | 1074 | 1976 | rep38 | 903 / 903 | 100.00 | CP005943 |
| OGLODLJF_88 | 177 | 1133 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGLODLJF_1 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_2 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_3 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_4 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_5 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_6 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_7 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_8 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_9 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_10 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_11 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_12 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_13 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_14 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_15 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_16 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_17 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_18 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_19 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_20 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_21 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_22 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_23 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_24 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_25 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_26 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_27 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_28 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_29 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_30 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_31 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_32 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_33 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_34 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_35 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_36 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_37 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_38 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_39 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_40 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_41 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_42 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_43 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_44 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_45 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_46 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_47 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_48 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_49 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_50 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_51 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_52 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_53 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_54 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_55 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_56 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_57 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_58 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_59 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_60 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_61 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_62 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_63 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_64 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_65 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_66 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_67 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_68 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_69 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_70 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_71 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_72 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_73 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_74 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_75 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_76 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_77 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_78 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_79 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_80 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_81 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_83 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_84 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_85 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_86 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_88 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_89 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_91 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_92 | 0.0 | 1.0 | 0.0 |
| OGLODLJF_93 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_95 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_96 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_98 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_99 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_100 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_103 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_107 | 1.0 | 0.0 | 1.0 |
| OGLODLJF_108 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OGLODLJF_9 | 22265 | 48672 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| OGLODLJF_9 | 55896 | 74631 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| OGLODLJF_25 | 3374 | 33542 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)