Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LIBBMFBM_8 | 59359 | 60063 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LIBBMFBM_21 | 53472 | 53666 | CspR | 2.44e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LIBBMFBM_21 | 53472 | 53669 | CspA | 3.74e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LIBBMFBM_55 | 1184 | 2119 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LIBBMFBM_72 | 1085 | 1987 | rep38 | 903 / 903 | 100.00 | CP005943 |
| LIBBMFBM_93 | 1 | 694 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIBBMFBM_1 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_2 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_3 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_4 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_5 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_6 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_7 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_8 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_9 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_10 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_11 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_12 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_13 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_14 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_15 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_16 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_17 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_18 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_19 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_20 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_21 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_22 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_23 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_24 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_25 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_26 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_27 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_28 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_29 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_30 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_31 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_32 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_33 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_34 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_35 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_36 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_37 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_38 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_39 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_40 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_41 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_42 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_43 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_44 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_45 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_46 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_47 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_48 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_49 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_50 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_51 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_52 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_53 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_54 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_55 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_56 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_57 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_59 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_60 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_61 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_62 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_63 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_64 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_65 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_66 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_67 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_68 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_69 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_70 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_71 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_72 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_73 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_74 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_75 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_76 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_77 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_78 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_79 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_80 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_81 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_82 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_83 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_84 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_85 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_86 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_87 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_88 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_89 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_90 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_91 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_92 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_93 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_94 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_95 | 1.0 | 0.0 | 1.0 |
| LIBBMFBM_97 | 0.0 | 1.0 | 0.0 |
| LIBBMFBM_98 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LIBBMFBM_14 | 19369 | 38365 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508, VOG4602, VOG9667 |
| LIBBMFBM_14 | 45601 | 69676 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
| LIBBMFBM_27 | 7877 | 38258 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)