Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIJFCAJD_6 | 59387 | 60091 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JIJFCAJD_9 | 6938 | 7132 | CspR | 4.13e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JIJFCAJD_9 | 6938 | 7135 | CspA | 6.34e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIJFCAJD_57 | 1219 | 2154 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JIJFCAJD_74 | 177 | 1133 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIJFCAJD_1 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_2 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_3 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_4 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_5 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_6 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_7 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_8 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_9 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_10 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_11 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_12 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_13 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_14 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_15 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_16 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_17 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_18 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_19 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_20 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_21 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_22 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_23 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_24 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_25 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_26 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_27 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_28 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_29 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_30 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_31 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_32 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_33 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_34 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_35 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_36 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_37 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_38 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_39 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_40 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_41 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_42 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_43 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_44 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_45 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_46 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_47 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_48 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_49 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_50 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_51 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_52 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_53 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_54 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_55 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_56 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_57 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_58 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_59 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_60 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_62 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_63 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_64 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_65 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_66 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_67 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_68 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_69 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_70 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_71 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_72 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_73 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_74 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_75 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_76 | 0.0 | 1.0 | 0.0 |
| JIJFCAJD_77 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_78 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_79 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_80 | 1.0 | 0.0 | 1.0 |
| JIJFCAJD_82 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIJFCAJD_7 | 66749 | 96963 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
| JIJFCAJD_8 | 24257 | 48505 | False | Siphoviridae | VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| JIJFCAJD_8 | 55769 | 74554 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)