Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BACCOAGC_8 | 59354 | 60058 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BACCOAGC_22 | 53233 | 53427 | CspR | 2.43e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BACCOAGC_22 | 53233 | 53430 | CspA | 3.72e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BACCOAGC_52 | 1187 | 2122 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BACCOAGC_69 | 1073 | 1975 | rep38 | 903 / 903 | 100.00 | CP005943 |
| BACCOAGC_83 | 171 | 1127 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BACCOAGC_1 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_2 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_3 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_4 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_5 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_6 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_7 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_8 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_9 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_10 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_11 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_12 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_13 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_14 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_15 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_16 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_17 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_18 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_19 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_20 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_21 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_22 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_23 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_24 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_25 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_26 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_27 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_28 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_29 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_30 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_31 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_32 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_33 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_34 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_35 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_36 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_37 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_38 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_39 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_40 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_41 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_42 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_43 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_44 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_45 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_46 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_47 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_48 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_49 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_50 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_51 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_52 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_53 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_54 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_56 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_57 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_58 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_59 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_60 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_61 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_62 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_63 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_64 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_65 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_66 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_67 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_68 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_69 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_70 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_71 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_72 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_73 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_74 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_75 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_76 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_77 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_78 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_79 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_80 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_81 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_82 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_83 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_84 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_85 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_86 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_87 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_88 | 0.0 | 1.0 | 0.0 |
| BACCOAGC_89 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_90 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_91 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_92 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_94 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_95 | 1.0 | 0.0 | 1.0 |
| BACCOAGC_96 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BACCOAGC_9 | 3593 | 34169 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
| BACCOAGC_11 | 22052 | 46593 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| BACCOAGC_11 | 56549 | 74901 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)