Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KLHGJHGA_3 | 113717 | 113013 | WalR | 9.55e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KLHGJHGA_4 | 53060 | 53254 | CspR | 7.23e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KLHGJHGA_4 | 53060 | 53257 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KLHGJHGA_52 | 1089 | 2024 | rep28 | 936 / 936 | 100.00 | CP005948 |
| KLHGJHGA_47 | 7541 | 8443 | rep38 | 903 / 903 | 100.00 | CP005943 |
| KLHGJHGA_86 | 833 | 1526 | repUS64 | 695 / 954 | 89.21 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KLHGJHGA_1 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_2 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_3 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_4 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_5 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_6 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_7 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_8 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_9 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_10 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_11 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_12 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_13 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_14 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_15 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_16 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_17 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_18 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_19 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_20 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_21 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_22 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_23 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_24 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_25 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_26 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_27 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_28 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_29 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_30 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_31 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_32 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_33 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_34 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_35 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_36 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_37 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_38 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_39 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_40 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_41 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_42 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_43 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_44 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_45 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_46 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_47 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_48 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_49 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_50 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_51 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_52 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_53 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_54 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_56 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_57 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_58 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_59 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_60 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_61 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_62 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_63 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_64 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_65 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_66 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_67 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_68 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_69 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_70 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_71 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_72 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_73 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_74 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_75 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_76 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_77 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_78 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_79 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_80 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_81 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_82 | 0.0 | 1.0 | 0.0 |
| KLHGJHGA_83 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_84 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_85 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_86 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_87 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_88 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_89 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_91 | 1.0 | 0.0 | 1.0 |
| KLHGJHGA_92 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KLHGJHGA_14 | 18971 | 37766 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG7508, VOG4602, VOG9667 |
| KLHGJHGA_14 | 44920 | 68995 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG9955 |
| KLHGJHGA_26 | 3302 | 33512 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)