Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GJGICLPD_7 | 59347 | 60051 | WalR | 5.72e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GJGICLPD_14 | 6926 | 7120 | CspR | 3.73e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GJGICLPD_14 | 6926 | 7123 | CspA | 5.73e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GJGICLPD_53 | 1174 | 2109 | rep28 | 936 / 936 | 100.00 | CP005948 |
| GJGICLPD_68 | 1071 | 1973 | rep38 | 903 / 903 | 100.00 | CP005943 |
| GJGICLPD_84 | 165 | 1121 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJGICLPD_1 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_2 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_3 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_4 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_5 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_6 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_7 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_8 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_9 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_10 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_11 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_12 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_13 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_14 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_15 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_16 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_17 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_18 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_19 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_20 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_21 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_22 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_23 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_24 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_25 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_26 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_27 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_28 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_29 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_30 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_31 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_32 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_33 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_34 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_35 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_36 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_37 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_38 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_39 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_40 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_41 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_42 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_43 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_44 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_45 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_46 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_47 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_48 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_49 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_50 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_51 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_52 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_53 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_54 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_55 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_56 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_57 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_59 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_60 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_61 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_62 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_63 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_64 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_65 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_66 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_67 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_68 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_69 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_70 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_71 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_72 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_73 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_74 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_75 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_76 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_77 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_78 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_79 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_80 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_81 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_82 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_83 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_84 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_86 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_87 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_88 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_89 | 0.0 | 1.0 | 0.0 |
| GJGICLPD_90 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_91 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_92 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_93 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_95 | 1.0 | 0.0 | 1.0 |
| GJGICLPD_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJGICLPD_8 | 3380 | 33959 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
| GJGICLPD_11 | 22279 | 48703 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| GJGICLPD_11 | 55935 | 74685 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)