Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MLCJFDCD_78 | 1831 | 1637 | CspR | 3.20e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MLCJFDCD_78 | 1831 | 1634 | CspA | 4.90e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MLCJFDCD_74 | 1202 | 2137 | rep28 | 936 / 936 | 100.00 | CP005948 |
| MLCJFDCD_105 | 661 | 1303 | repUS64 | 644 / 954 | 88.35 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MLCJFDCD_1 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_2 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_3 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_4 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_5 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_6 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_7 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_8 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_9 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_10 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_11 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_12 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_13 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_14 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_15 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_16 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_17 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_18 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_19 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_20 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_21 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_22 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_23 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_24 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_25 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_26 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_27 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_28 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_29 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_30 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_31 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_32 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_33 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_34 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_35 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_36 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_37 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_38 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_39 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_40 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_41 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_42 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_43 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_44 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_45 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_46 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_47 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_48 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_49 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_50 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_51 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_52 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_53 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_54 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_55 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_56 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_57 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_58 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_59 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_60 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_61 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_62 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_63 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_64 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_65 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_66 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_67 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_68 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_69 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_70 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_71 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_72 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_73 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_74 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_75 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_76 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_77 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_78 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_79 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_80 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_81 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_82 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_83 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_84 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_86 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_87 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_88 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_89 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_90 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_91 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_92 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_93 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_94 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_95 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_96 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_97 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_98 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_99 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_100 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_101 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_102 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_103 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_104 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_106 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_107 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_108 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_109 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_110 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_111 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_112 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_113 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_114 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_115 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_118 | 0.0 | 1.0 | 0.0 |
| MLCJFDCD_119 | 1.0 | 0.0 | 1.0 |
| MLCJFDCD_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MLCJFDCD_5 | 22308 | 49858 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| MLCJFDCD_5 | 56314 | 75271 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| MLCJFDCD_27 | 3631 | 34947 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)