Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AFBGFBMF_3 | 113485 | 112781 | WalR | 9.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| AFBGFBMF_7 | 110887 | 110693 | CspR | 5.20e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AFBGFBMF_7 | 110887 | 110690 | CspA | 7.97e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AFBGFBMF_51 | 1104 | 2039 | rep28 | 936 / 936 | 100.00 | CP005948 |
| AFBGFBMF_52 | 2963 | 3865 | rep38 | 903 / 903 | 100.00 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFBGFBMF_1 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_2 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_3 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_4 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_5 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_6 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_7 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_8 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_9 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_10 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_11 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_12 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_13 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_14 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_15 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_16 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_17 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_18 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_19 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_20 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_21 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_22 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_23 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_24 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_25 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_26 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_27 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_28 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_29 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_30 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_31 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_32 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_33 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_34 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_35 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_36 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_37 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_38 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_39 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_40 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_41 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_42 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_43 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_44 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_45 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_46 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_47 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_48 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_49 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_50 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_51 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_52 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_53 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_54 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_55 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_57 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_58 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_59 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_60 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_61 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_62 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_63 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_64 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_65 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_66 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_67 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_68 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_69 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_70 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_71 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_72 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_73 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_74 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_75 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_76 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_77 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_78 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_79 | 0.0 | 1.0 | 0.0 |
| AFBGFBMF_80 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_81 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_82 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_83 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_84 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_85 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_86 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_88 | 1.0 | 0.0 | 1.0 |
| AFBGFBMF_89 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFBGFBMF_10 | 22052 | 48400 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| AFBGFBMF_10 | 55568 | 74026 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| AFBGFBMF_27 | 3319 | 33564 | False | Siphoviridae | VOG10957, VOG4626, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)