Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEMJNBFL_1 | 37770 | 38474 | WalR | 1.76e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OEMJNBFL_3 | 29577 | 30477 | rep38 | 901 / 903 | 95.12 | CP005943 |
| OEMJNBFL_4 | 19952 | 21052 | repUS73 | 1101 / 1101 | 95.00 | CP002654 |
| OEMJNBFL_11 | 16894 | 17849 | repUS64 | 959 / 954 | 81.02 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEMJNBFL_1 | 0.0 | 1.0 | 0.0 |
| OEMJNBFL_2 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_3 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_4 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_5 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_6 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_7 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_8 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_9 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_10 | 1.0 | 0.0 | 1.0 |
| OEMJNBFL_11 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEMJNBFL_1 | 570408 | 597370 | False | Siphoviridae | VOG0044, VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713 |
| OEMJNBFL_1 | 2115007 | 2137723 | False | Siphoviridae | VOG8438, VOG4626, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG1183, VOG5709, VOG0198 |
| OEMJNBFL_1 | 2141220 | 2167626 | False | Siphoviridae | VOG4566, VOG0226, VOG0283, VOG0535, VOG9667, VOG0181, VOG9655, VOG6495, VOG11003, VOG8615, VOG6139, VOG3556, VOG6495, VOG4602, VOG4645, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG6965, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)